PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_32256.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 354aa    MW: 40131.4 Da    PI: 5.8232
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_32256.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29127187259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK++ gs+fpr+YYrCt++   gC ++k+v+rs++dp+v+e+tY+g+H+++
  evm.TU.contig_32256.1 127 EDGYCWRKYGQKDILGSNFPRGYYRCTHRhteGCLATKQVQRSDSDPTVFEVTYRGRHTCN 187
                            8***************************99999**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182908.76E-25126188IPR003657WRKY domain
SMARTSM007743.8E-41126188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-26126187IPR003657WRKY domain
PROSITE profilePS5081123.066127189IPR003657WRKY domain
PfamPF031061.9E-26127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEKGMEMEQR SLVNELKQGK ELAKQLRNHL NPSSSEETRQ FLVEKILSSY EKALSLLNWA  60
PLVLETQPPA VNPTLGSPQS SFANTSPRSD GSNLEWKDQC SKGAHKKRKT SPRWTEQVKV  120
CLGVGAEDGY CWRKYGQKDI LGSNFPRGYY RCTHRHTEGC LATKQVQRSD SDPTVFEVTY  180
RGRHTCNTRS SNLTMATTNQ VSKENKDNRQ EQQQLLQQQE LSFNFGSNFK VKTEDLDMRD  240
EIFPSFSFHV ESENVNNNDI FWESNFMESF SSTFLPPTTS ESNHFSASPC HMTNYRLGQI  300
VQSSESDLTA EIISAPTSVT NSPMEDFGLS SLDMEFPFDN VHEIFSCHGG ERN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-131271841872Probable WRKY transcription factor 4
2lex_A4e-131271841872Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320852.21e-132hypothetical protein POPTR_0014s09190g
TrEMBLG3FF791e-134G3FF79_9R
STRINGPOPTR_0014s09190.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48882352
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-50WRKY DNA-binding protein 46